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Amazon vs Shopify for Cross-border Sellers

Compare Amazon FBA and Shopify for cross-border selling: fees, compliance obligations, tax handling, and market reach.

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Platform Overview

Amazon FBA

Amazon's fulfillment service handles storage, packing, shipping, and customer service. Sellers list products on Amazon marketplace.

Pros

  • Built-in traffic and trust
  • FBA handles fulfillment
  • Marketplace facilitator tax collection in US
  • Prime badge

Cons

  • High fees (15-45%)
  • Limited brand control
  • Amazon owns customer data
  • Strict policies

Best for: Sellers who want quick market access with minimal setup

Cost: Referral fee 8-15% + FBA fees $3-10/item

Setup: 1-2 weeks

Shopify

Independent e-commerce platform where sellers build their own branded online store. Sellers handle their own fulfillment or use 3PL.

Pros

  • Full brand control
  • Own customer data
  • Lower transaction fees
  • Flexible customization

Cons

  • No built-in traffic
  • Must handle tax compliance yourself
  • Requires marketing investment
  • Fulfillment complexity

Best for: Sellers who want to build a brand and own their customer relationships

Cost: Monthly fee $29-299 + payment processing 2.9% + 30¢

Setup: 2-4 weeks

Tax & Compliance

Amazon Tax Handling

Amazon collects sales tax as marketplace facilitator in US states. In EU/UK, Amazon may be deemed supplier for VAT on qualifying sales.

Pros

  • Automatic tax collection in many markets
  • Reduces seller compliance burden
  • Tax reports provided

Cons

  • Seller may still need to register/file
  • Doesn't cover DTC sales
  • Platform controls tax settings

Best for: Sellers who want simplified tax handling

Cost: Included in platform fees

Setup: Automatic

Shopify Tax Handling

Sellers must configure tax settings, register for VAT/GST/sales tax, and file returns. Shopify Tax provides automated calculations but registration is seller's responsibility.

Pros

  • Full control over tax strategy
  • Shopify Tax automates calculations
  • Can optimize for each market

Cons

  • Must register in each market
  • Must file returns yourself
  • More compliance work

Best for: Sellers with established tax compliance infrastructure

Cost: Shopify Tax: 0.35-0.6% per transaction

Setup: Ongoing

FAQ

Can I use both Amazon and Shopify?+

Yes, many sellers use Amazon for marketplace sales and Shopify for DTC/brand building. This multi-channel approach requires separate compliance reviews for each channel.

Does Amazon's tax collection cover my Shopify sales?+

No. Amazon's marketplace facilitator tax collection only applies to Amazon marketplace orders. Your Shopify sales require separate tax compliance.

Related Comparisons

Related Guides

Primary Sources

  • Amazon Seller Central: Tax collection
  • Shopify Tax documentation
  • Streamlined Sales Tax: Marketplace seller guidance

Updated 2026-08-02